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 - databases for immunodeficiency-causing variations

   RAG2base
   Variation registry for  RAG2 deficiency


Codon changes - RAG2base

  a
a
a		 a
a
c		 a
a
g		 a
a
t		 a
c
a		 a
c
c		 a
c
g		 a
c
t		 a
g
a		 a
g
c		 a
g
g		 a
g
t		 a
t
a		 a
t
c		 a
t
g		 a
t
t		 c
a
a		 c
a
c		 c
a
g		 c
a
t		 c
c
a		 c
c
c		 c
c
g		 c
c
t		 c
g
a		 c
g
c		 c
g
g		 c
g
t		 c
t
a		 c
t
c		 c
t
g		 c
t
t		 g
a
a		 g
a
c		 g
a
g		 g
a
t		 g
c
a		 g
c
c		 g
c
g		 g
c
t		 g
g
a		 g
g
c		 g
g
g		 g
g
t		 g
t
a		 g
t
c		 g
t
g		 g
t
t		 t
a
a		 t
a
c		 t
a
g		 t
a
t		 t
c
a		 t
c
c		 t
c
g		 t
c
t		 t
g
a		 t
g
c		 t
g
g		 t
g
t		 t
t
a		 t
t
c		 t
t
g		 t
t
t		 Total
aaa  1                                                              1
aac          2                                                      2
aag                                                                 0
aat                                                                 0
aca                                                                 0
acc              2                                                  2
acg                                                                 0
act    1                                                            1
aga                                         3                       3
agc                                                                 0
agg                                                                 0
agt                                                                 0
ata                                                                 0
atc                                                                 0
atg           1                                   1                 2
att                                                                 0
caa                                                                 0
cac                                                                 0
cag                                                   2             2
cat                        2                                        2
cca                         1                                       1
ccc                                                                 0
ccg                                                                 0
cct                                                                 0
cga                                                         1       1
cgc                                                                 0
cgg                   8                                       19     27
cgt                                                                 0
cta                                                                 0
ctc                                                                 0
ctg                                                                 0
ctt                                                                 0
gaa                                                 2               2
gac                                                                 0
gag                                                                 0
gat                                                                 0
gca                                                                 0
gcc                                                                 0
gcg                                                                 0
gct        2                                                        2
gga         2                                                       2
ggc                                              10                  10
ggg                                       1                         1
ggt                                                                 0
gta                                                                 0
gtc                                                                 0
gtg                                                                 0
gtt                                                                 0
taa                                                                 0
tac                                  2                              2
tag                                                                 0
tat                                                                 0
tca                                                 2           1   3
tcc                                                                 0
tcg                                                                 0
tct                                                                 0
tga                                                                 0
tgc                                                  4        1     5
tgg           3                                             2     2 7
tgt                                                                 0
tta                                                                 0
ttc                                                                 0
ttg                                                                 0
ttt                                                            1    1
Total 01010002224002000080000210000000020000103000010104420000030201102079

-->(%) a
a
a		 a
a
c		 a
a
g		 a
a
t		 a
c
a		 a
c
c		 a
c
g		 a
c
t		 a
g
a		 a
g
c		 a
g
g		 a
g
t		 a
t
a		 a
t
c		 a
t
g		 a
t
t		 c
a
a		 c
a
c		 c
a
g		 c
a
t		 c
c
a		 c
c
c		 c
c
g		 c
c
t		 c
g
a		 c
g
c		 c
g
g		 c
g
t		 c
t
a		 c
t
c		 c
t
g		 c
t
t		 g
a
a		 g
a
c		 g
a
g		 g
a
t		 g
c
a		 g
c
c		 g
c
g		 g
c
t		 g
g
a		 g
g
c		 g
g
g		 g
g
t		 g
t
a		 g
t
c		 g
t
g		 g
t
t		 t
a
a		 t
a
c		 t
a
g		 t
a
t		 t
c
a		 t
c
c		 t
c
g		 t
c
t		 t
g
a		 t
g
c		 t
g
g		 t
g
t		 t
t
a		 t
t
c		 t
t
g		 t
t
t		 Total
aaa  1                                                              1
aac          3                                                      3
aag                                                                 0
aat                                                                 0
aca                                                                 0
acc              3                                                  3
acg                                                                 0
act    1                                                            1
aga                                         4                       4
agc                                                                 0
agg                                                                 0
agt                                                                 0
ata                                                                 0
atc                                                                 0
atg           1                                   1                 3
att                                                                 0
caa                                                                 0
cac                                                                 0
cag                                                   3             3
cat                        3                                        3
cca                         1                                       1
ccc                                                                 0
ccg                                                                 0
cct                                                                 0
cga                                                         1       1
cgc                                                                 0
cgg                   10                                       24     34
cgt                                                                 0
cta                                                                 0
ctc                                                                 0
ctg                                                                 0
ctt                                                                 0
gaa                                                 3               3
gac                                                                 0
gag                                                                 0
gat                                                                 0
gca                                                                 0
gcc                                                                 0
gcg                                                                 0
gct        3                                                        3
gga         3                                                       3
ggc                                              13                  13
ggg                                       1                         1
ggt                                                                 0
gta                                                                 0
gtc                                                                 0
gtg                                                                 0
gtt                                                                 0
taa                                                                 0
tac                                  3                              3
tag                                                                 0
tat                                                                 0
tca                                                 3           1   4
tcc                                                                 0
tcg                                                                 0
tct                                                                 0
tga                                                                 0
tgc                                                  5        1     6
tgg           4                                             3     3 9
tgt                                                                 0
tta                                                                 0
ttc                                                                 0
ttg                                                                 0
ttt                                                            1    1
Total 0101000333500300001000003100000000300001040000131055300000402511030100
    indicates codon change that require more complex mutation than single nucleotide substitution.
    indicates codon change that single nucleotide doesn't change amino acid (silent mutation).


This site is updated by Gerard Schaafsma
© Protein Structure and Bioinformatics, Lund University, 2017
Last modified 02.03.2025