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 - databases for immunodeficiency-causing variations

   RAG1base
   Variation registry for  RAG1 deficiency


Codon changes - RAG1base

  a
a
a		 a
a
c		 a
a
g		 a
a
t		 a
c
a		 a
c
c		 a
c
g		 a
c
t		 a
g
a		 a
g
c		 a
g
g		 a
g
t		 a
t
a		 a
t
c		 a
t
g		 a
t
t		 c
a
a		 c
a
c		 c
a
g		 c
a
t		 c
c
a		 c
c
c		 c
c
g		 c
c
t		 c
g
a		 c
g
c		 c
g
g		 c
g
t		 c
t
a		 c
t
c		 c
t
g		 c
t
t		 g
a
a		 g
a
c		 g
a
g		 g
a
t		 g
c
a		 g
c
c		 g
c
g		 g
c
t		 g
g
a		 g
g
c		 g
g
g		 g
g
t		 g
t
a		 g
t
c		 g
t
g		 g
t
t		 t
a
a		 t
a
c		 t
a
g		 t
a
t		 t
c
a		 t
c
c		 t
c
g		 t
c
t		 t
g
a		 t
g
c		 t
g
g		 t
g
t		 t
t
a		 t
t
c		 t
t
g		 t
t
t		 Total
aaa         1       1               1               1               4
aac              2                                                  2
aag                                                                 0
aat                                                                 0
aca                                                                 0
acc                                                                 0
acg                                                                 0
act                                                                 0
aga                                                                 0
agc                                                                 0
agg   2        4                                                    6
agt                                                                 0
ata                                                                 0
atc                                                                 0
atg                                               1                 1
att        2                                                        2
caa                                                                 0
cac                                                                 0
cag                       2                           2             4
cat                                1                                1
cca                                                                 0
ccc                                                                 0
ccg                                                                 0
cct                                                                 0
cga                                                         4       4
cgc                  14           1                           12      27
cgg                   10                       1               19     30
cgt            1       7                                       2    10
cta                                                                 0
ctc                                                                 0
ctg                           4                                     4
ctt                                                                22
gaa                                                 1               1
gac                                                                 0
gag   3                                       1                     4
gat                                            1                    1
gca                     1                                           1
gcc                                                                 0
gcg                                               5                 5
gct                                    2                            2
gga                                                                 0
ggc                                  2                              2
ggg                                                                 0
ggt                                                                 0
gta                                                                 0
gtc                                                                 0
gtg               1                                                 1
gtt                                                                 0
taa                                                                 0
tac                                                   4      1      5
tag                                                                 0
tat                                                 1 2             3
tca                                                                 0
tcc                                                                 0
tcg                       2                                         2
tct                                                                 0
tga                                                                 0
tgc                                                         1       1
tgg                           2                       2        1    5
tgt                                                    3      2    16
tta                                                 3               3
ttc                                                                 0
ttg                                                                 0
ttt                                                                 0
Total 005000021005021011410710400060010112020000002100606010300005132130003139

-->(%) a
a
a		 a
a
c		 a
a
g		 a
a
t		 a
c
a		 a
c
c		 a
c
g		 a
c
t		 a
g
a		 a
g
c		 a
g
g		 a
g
t		 a
t
a		 a
t
c		 a
t
g		 a
t
t		 c
a
a		 c
a
c		 c
a
g		 c
a
t		 c
c
a		 c
c
c		 c
c
g		 c
c
t		 c
g
a		 c
g
c		 c
g
g		 c
g
t		 c
t
a		 c
t
c		 c
t
g		 c
t
t		 g
a
a		 g
a
c		 g
a
g		 g
a
t		 g
c
a		 g
c
c		 g
c
g		 g
c
t		 g
g
a		 g
g
c		 g
g
g		 g
g
t		 g
t
a		 g
t
c		 g
t
g		 g
t
t		 t
a
a		 t
a
c		 t
a
g		 t
a
t		 t
c
a		 t
c
c		 t
c
g		 t
c
t		 t
g
a		 t
g
c		 t
g
g		 t
g
t		 t
t
a		 t
t
c		 t
t
g		 t
t
t		 Total
aaa         1       1               1               1               3
aac              1                                                  1
aag                                                                 0
aat                                                                 0
aca                                                                 0
acc                                                                 0
acg                                                                 0
act                                                                 0
aga                                                                 0
agc                                                                 0
agg   1        3                                                    4
agt                                                                 0
ata                                                                 0
atc                                                                 0
atg                                               1                 1
att        1                                                        1
caa                                                                 0
cac                                                                 0
cag                       1                           1             3
cat                                1                                1
cca                                                                 0
ccc                                                                 0
ccg                                                                 0
cct                                                                 0
cga                                                         3       3
cgc                  10           1                           9      19
cgg                   7                       1               14     22
cgt            1       5                                       1    7
cta                                                                 0
ctc                                                                 0
ctg                           3                                     3
ctt                                                                11
gaa                                                 1               1
gac                                                                 0
gag   2                                       1                     3
gat                                            1                    1
gca                     1                                           1
gcc                                                                 0
gcg                                               4                 4
gct                                    1                            1
gga                                                                 0
ggc                                  1                              1
ggg                                                                 0
ggt                                                                 0
gta                                                                 0
gtc                                                                 0
gtg               1                                                 1
gtt                                                                 0
taa                                                                 0
tac                                                   3      1      4
tag                                                                 0
tat                                                 1 1             2
tca                                                                 0
tcc                                                                 0
tcg                       1                                         1
tct                                                                 0
tga                                                                 0
tgc                                                         1       1
tgg                           1                       1        1    4
tgt                                                    2      1    14
tta                                                 2               2
ttc                                                                 0
ttg                                                                 0
ttt                                                                 0
Total 004000011004011011075103000400101110100000011004040720000491520002100
    indicates codon change that require more complex mutation than single nucleotide substitution.
    indicates codon change that single nucleotide doesn't change amino acid (silent mutation).


This site is updated by Gerard Schaafsma
© Protein Structure and Bioinformatics, Lund University, 2017
Last modified 02.03.2025