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 - databases for immunodeficiency-causing variations

   PRF1base
   Variation registry for  Familial haemophagocytic lymphohistiocytosis, type II (FHL2)


Codon changes - PRF1base

  a
a
a		 a
a
c		 a
a
g		 a
a
t		 a
c
a		 a
c
c		 a
c
g		 a
c
t		 a
g
a		 a
g
c		 a
g
g		 a
g
t		 a
t
a		 a
t
c		 a
t
g		 a
t
t		 c
a
a		 c
a
c		 c
a
g		 c
a
t		 c
c
a		 c
c
c		 c
c
g		 c
c
t		 c
g
a		 c
g
c		 c
g
g		 c
g
t		 c
t
a		 c
t
c		 c
t
g		 c
t
t		 g
a
a		 g
a
c		 g
a
g		 g
a
t		 g
c
a		 g
c
c		 g
c
g		 g
c
t		 g
g
a		 g
g
c		 g
g
g		 g
g
t		 g
t
a		 g
t
c		 g
t
g		 g
t
t		 t
a
a		 t
a
c		 t
a
g		 t
a
t		 t
c
a		 t
c
c		 t
c
g		 t
c
t		 t
g
a		 t
g
c		 t
g
g		 t
g
t		 t
t
a		 t
t
c		 t
t
g		 t
t
t		 Total
aaa                                                                 0
aac          4                                                      4
aag                                                                 0
aat                                                                 0
aca                                                                 0
acc              1                                                  1
acg               8                                                 8
act                                                                 0
aga                                                                 0
agc  2                                                              2
agg                                                           1     1
agt                                                                 0
ata                                                                 0
atc  2                                                              2
atg             4                                 1                 5
att                                                                 0
caa                                                 2               2
cac                 10        1                                      11
cag                       3                           1             4
cat                                                                 0
cca                                                                 0
ccc      1                       6       1                          8
ccg                                                                 0
cct        6           1                                            7
cga                                                                 0
cgc                  7                       2               5      14
cgg                       1                                   11     12
cgt                    2                                            2
cta                                                                 0
ctc                                                                 0
ctg                                                                 0
ctt                                                                 0
gaa                                                                 0
gac                                                  2              2
gag   2                                                             2
gat    1                                                            1
gca                                                                 0
gcc                                  2                              2
gcg                                               33                 33
gct                                                                 0
gga                                                                 0
ggc          26               2       1                              29
ggg           3                       2                             5
ggt                                                                 0
gta                                                                 0
gtc                                                                 0
gtg               5                           1                     6
gtt                                                                 0
taa                                                                 0
tac                                                 3               3
tag                                                                 0
tat                                                                 0
tca                                                 1               1
tcc                                                                 0
tcg                                                                 0
tct                                                                 0
tga                                                                 0
tgc                          1                                   1  2
tgg                           2                             48       50
tgt                                                    1    3       4
tta                                                                 0
ttc                              1                           2      3
ttg                                                                 0
ttt                                                1                1
Total 0421010603030411301070300400420070003200100021000341621100005171200100227

-->(%) a
a
a		 a
a
c		 a
a
g		 a
a
t		 a
c
a		 a
c
c		 a
c
g		 a
c
t		 a
g
a		 a
g
c		 a
g
g		 a
g
t		 a
t
a		 a
t
c		 a
t
g		 a
t
t		 c
a
a		 c
a
c		 c
a
g		 c
a
t		 c
c
a		 c
c
c		 c
c
g		 c
c
t		 c
g
a		 c
g
c		 c
g
g		 c
g
t		 c
t
a		 c
t
c		 c
t
g		 c
t
t		 g
a
a		 g
a
c		 g
a
g		 g
a
t		 g
c
a		 g
c
c		 g
c
g		 g
c
t		 g
g
a		 g
g
c		 g
g
g		 g
g
t		 g
t
a		 g
t
c		 g
t
g		 g
t
t		 t
a
a		 t
a
c		 t
a
g		 t
a
t		 t
c
a		 t
c
c		 t
c
g		 t
c
t		 t
g
a		 t
g
c		 t
g
g		 t
g
t		 t
t
a		 t
t
c		 t
t
g		 t
t
t		 Total
aaa                                                                 0
aac          2                                                      2
aag                                                                 0
aat                                                                 0
aca                                                                 0
acc                                                                 0
acg               4                                                 4
act                                                                 0
aga                                                                 0
agc  1                                                              1
agg                                                                 0
agt                                                                 0
ata                                                                 0
atc  1                                                              1
atg             2                                                   2
att                                                                 0
caa                                                 1               1
cac                 4                                               5
cag                       1                                         2
cat                                                                 0
cca                                                                 0
ccc                              3                                  4
ccg                                                                 0
cct        3                                                        3
cga                                                                 0
cgc                  3                       1               2      6
cgg                                                           5     5
cgt                    1                                            1
cta                                                                 0
ctc                                                                 0
ctg                                                                 0
ctt                                                                 0
gaa                                                                 0
gac                                                  1              1
gag   1                                                             1
gat                                                                 0
gca                                                                 0
gcc                                  1                              1
gcg                                               15                 15
gct                                                                 0
gga                                                                 0
ggc          11               1                                      13
ggg           1                       1                             2
ggt                                                                 0
gta                                                                 0
gtc                                                                 0
gtg               2                                                 3
gtt                                                                 0
taa                                                                 0
tac                                                 1               1
tag                                                                 0
tat                                                                 0
tca                                                                 0
tcc                                                                 0
tcg                                                                 0
tct                                                                 0
tga                                                                 0
tgc                                                                 1
tgg                           1                             21       22
tgt                                                         1       2
tta                                                                 0
ttc                                                          1      1
ttg                                                                 0
ttt                                                                 0
Total 0210000301310206043010020021003000110000001000015031000000223500000100
    indicates codon change that require more complex mutation than single nucleotide substitution.
    indicates codon change that single nucleotide doesn't change amino acid (silent mutation).


This site is updated by Gerard Schaafsma
© Protein Structure and Bioinformatics, Lund University, 2017
Last modified 02.03.2025