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 - databases for immunodeficiency-causing variations

   CD40Lbase
   Variation registry for  X-linked Hyper-IgM syndrome (XHIM)


Codon changes - CD40Lbase

  a
a
a		 a
a
c		 a
a
g		 a
a
t		 a
c
a		 a
c
c		 a
c
g		 a
c
t		 a
g
a		 a
g
c		 a
g
g		 a
g
t		 a
t
a		 a
t
c		 a
t
g		 a
t
t		 c
a
a		 c
a
c		 c
a
g		 c
a
t		 c
c
a		 c
c
c		 c
c
g		 c
c
t		 c
g
a		 c
g
c		 c
g
g		 c
g
t		 c
t
a		 c
t
c		 c
t
g		 c
t
t		 g
a
a		 g
a
c		 g
a
g		 g
a
t		 g
c
a		 g
c
c		 g
c
g		 g
c
t		 g
g
a		 g
g
c		 g
g
g		 g
g
t		 g
t
a		 g
t
c		 g
t
g		 g
t
t		 t
a
a		 t
a
c		 t
a
g		 t
a
t		 t
c
a		 t
c
c		 t
c
g		 t
c
t		 t
g
a		 t
g
c		 t
g
g		 t
g
t		 t
t
a		 t
t
c		 t
t
g		 t
t
t		 Total
aaa     2                                                           2
aac                                                                 0
aag                                                   2             3
aat                                                                 0
aca                                                                 0
acc  1           1                                                  2
acg               10                                                 10
act                                                                 0
aga             1                                           4       5
agc                                                                 0
agg                                                                 0
agt         1                                                       1
ata                                                                 0
atc                                                                 0
atg           2                                                     2
att                                                                 0
caa                         4                       14               18
cac                                                  1              1
cag                                                   2             2
cat                            1                                    1
cca                                                                 0
ccc                                                                 0
ccg                                                                 0
cct                                                                 0
cga                                                         4       4
cgc                                                                 0
cgg                                                                 0
cgt                                                                 0
cta                     1                                           1
ctc                                                                 0
ctg                       7                                         7
ctt                                                                 0
gaa                                                 5               5
gac                                                                 0
gag                                           1       2             3
gat                                                                 0
gca                                                                 0
gcc                                  2                              2
gcg                                   4                             4
gct                        1           1                            2
gga                         1       2   2       1           3       9
ggc          1                       1                              2
ggg                           2                                     2
ggt                            1                                    1
gta                                                                 0
gtc                                  2   1                          3
gtg                                   1                             1
gtt                                                                 0
taa                                                                 0
tac                                                 1               1
tag                                                                 0
tat    1                               2              1        3    7
tca                                                 1               1
tcc                                                              1  1
tcg                                                   3             3
tct                                                                 0
tga                                                                 0
tgc                                                         14       14
tgg                           2               2       5        2    11
tgt                                                                 0
tta                                                     5           5
ttc              1                                                  1
ttg                                                       2         2
ttt                                                             1   1
Total 11012000112012100000010715042000025532100003010002111505020250051100140

-->(%) a
a
a		 a
a
c		 a
a
g		 a
a
t		 a
c
a		 a
c
c		 a
c
g		 a
c
t		 a
g
a		 a
g
c		 a
g
g		 a
g
t		 a
t
a		 a
t
c		 a
t
g		 a
t
t		 c
a
a		 c
a
c		 c
a
g		 c
a
t		 c
c
a		 c
c
c		 c
c
g		 c
c
t		 c
g
a		 c
g
c		 c
g
g		 c
g
t		 c
t
a		 c
t
c		 c
t
g		 c
t
t		 g
a
a		 g
a
c		 g
a
g		 g
a
t		 g
c
a		 g
c
c		 g
c
g		 g
c
t		 g
g
a		 g
g
c		 g
g
g		 g
g
t		 g
t
a		 g
t
c		 g
t
g		 g
t
t		 t
a
a		 t
a
c		 t
a
g		 t
a
t		 t
c
a		 t
c
c		 t
c
g		 t
c
t		 t
g
a		 t
g
c		 t
g
g		 t
g
t		 t
t
a		 t
t
c		 t
t
g		 t
t
t		 Total
aaa     1                                                           1
aac                                                                 0
aag                                                   1             2
aat                                                                 0
aca                                                                 0
acc  1           1                                                  1
acg               7                                                 7
act                                                                 0
aga             1                                           3       4
agc                                                                 0
agg                                                                 0
agt         1                                                       1
ata                                                                 0
atc                                                                 0
atg           1                                                     1
att                                                                 0
caa                         3                       10               13
cac                                                  1              1
cag                                                   1             1
cat                            1                                    1
cca                                                                 0
ccc                                                                 0
ccg                                                                 0
cct                                                                 0
cga                                                         3       3
cgc                                                                 0
cgg                                                                 0
cgt                                                                 0
cta                     1                                           1
ctc                                                                 0
ctg                       5                                         5
ctt                                                                 0
gaa                                                 4               4
gac                                                                 0
gag                                           1       1             2
gat                                                                 0
gca                                                                 0
gcc                                  1                              1
gcg                                   3                             3
gct                        1           1                            1
gga                         1       1   1       1           2       6
ggc          1                       1                              1
ggg                           1                                     1
ggt                            1                                    1
gta                                                                 0
gtc                                  1   1                          2
gtg                                   1                             1
gtt                                                                 0
taa                                                                 0
tac                                                 1               1
tag                                                                 0
tat    1                               1              1        2    5
tca                                                 1               1
tcc                                                              1  1
tcg                                                   2             2
tct                                                                 0
tga                                                                 0
tgc                                                         10       10
tgg                           1               1       4        1    8
tgt                                                                 0
tta                                                     4           4
ttc              1                                                  1
ttg                                                       1         1
ttt                                                             1   1
Total 1101100011101170000010514031000014421100002010001511104010180041100100
    indicates codon change that require more complex mutation than single nucleotide substitution.
    indicates codon change that single nucleotide doesn't change amino acid (silent mutation).


This site is updated by Gerard Schaafsma
© Protein Structure and Bioinformatics, Lund University, 2017
Last modified 02.03.2025