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Protein Structure and
Bioinformatics Group

Prof. Mauno Vihinen

Lund University

Databases


IDbases
are locus-specific databases for immunodeficiency-causing variations, which contain in addition to variation information also some clinical data.
http://structure.bmc.lu.se/idbase/


KinMutBase
is a comprehensive database of disease-causing variations in protein kinase domains.
http://structure.bmc.lu.se/idbase/KinMutBase/


SH2base
is a database for disease-causing variants in Src holology 2 (SH2) domains.
http://structure.bmc.lu.se/idbase/SH2base/


ImmunoDeficiency Resource (IDR)
is a central knowledge base for essential information on immunodeficiencies. This resource includes tools for clinical, biochemical, genetic, structural and computational analyses as well as links to related information maintained by others.
http://structure.bmc.lu.se/idbase/IDRefSeq/idr/index.shtml


Immunome Knowledge Base (IKB)
is a dedicated resource for immunological information. IKB contains information for human immunome genes and proteins, phylogenetic trees and evolutionary information for immunome orthologs, ortholog groups for metazoan immunome, and variation data on genomic, transcriptomic and proteomic level. IKB integrates three previous databases, Immunome, ImmTree and ImmunomeBase with additional data.
http://structure.bmc.lu.se/idbase/IKB/


GOme

The Gene Ontology Cluster Database GOme
is a browsable repository for gene ontology clusters as depicted in:
Tiirikka, T., Siermala, M., Vihinen, M., 2014. Clustering of Gene Ontology Terms in Genomes. Gene 25: 155-164 PubMed
http://structure.bmc.lu.se/GOme/gomev03.php

Updated 2015-04-07 by Gerard Schaafsma

Home

Databases:
IDbases
KinMutBase
SH2base
ImmunoDeficiency Resource (IDR)
Immunome Knowledge Base (IKB)
GOme

Bioinformatics services:
B-Cell Proteome
Bioinformatics benchmarks
MultiDisp
PID classification
PON-BTK
PON-P2
PON-PS
PON-MMR2
PON-mt-tRNA
PON-Diso
PON-Sol
ProCon
PPSC
VariBench
VariSNP

Standards and guidelines:
VariO
MIASM
HVP Guidelines
Guidelines for prediction tools
Curating gene variant databases
HVP Country Nodes
Recommendations for LSDBs

Research:
Group members
Publications

News from PSB:
News

Links:
Lund University
Medical Faculty
Department of Experimental Medical Science


Lund University, Sweden 2015 ©