PON-mt-tRNA

PON-mt-tRNA is a posterior probability-based method for classification of mitochondrial tRNA variations. It integrates machine learning-based probability of pathogenicity and evidence-based likelihood of pathogenicity to predict the posterior probability of pathogenicity. In absence of evidence, it classifies the variations based on the machine learning-based probability of pathogenicity. It is trained and tested on variants classified as definitely pathogenic and definitely neutral by Yarham et al..
A manuscript describing PON-mt-tRNA has been published in Nucleic Acids Research.

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PON-mt-tRNA prediction

Example

mtDNA location, Reference nucleotide, Altered nucleotide[,Segregation[,Biochemistry[,Histochemistry]]]
7505,A,G
7505,A,G,1
8300,T,C,NA,1,NA
5644,T,C,0,NA,1
5644,T,A,0,NA,0
5644,T,C,1,1,1
15984,A,T,NA,NA,NA
15984,A,C,0,0,0

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